TY - JOUR
T1 - Development and Validation of a Test to Monitor Endoscopic Activity in Patients With Crohn's Disease Based on Serum Levels of Proteins
AU - D'Haens, Geert
AU - Kelly, Orlaith
AU - Battat, Robert
AU - Silverberg, Mark S.
AU - Laharie, David
AU - Louis, Edouard
AU - Savarino, Edoardo
AU - Bodini, Giorgia
AU - Yarur, Andres
AU - Boland, Brigid S.
AU - Afif, Waqqas
AU - Li, Xiao jun
AU - Hale, Michael
AU - Ho, Jessica
AU - Kondragunta, Venkateswarlu
AU - Huang, Benjamin
AU - Kuy, Crystal
AU - Okada, Lauren
AU - Hester, Kelly D.
AU - Bray, Kurtis R.
AU - Mimms, Larry
AU - Jain, Anjali
AU - Singh, Siddharth
AU - Collins, Angelina
AU - Valasek, Mark A.
AU - Sandborn, William J.
AU - Vermeire, Severine
AU - Dulai, Parambir S.
N1 - Funding Information:
Funding The University of California San Diego cohorts were recruited with support from a grant to William Sandborn and Parambir S. Dulai through the Litwin Pioneers Program Crohn’s and Colitis Foundation and an unrestricted collaboration grant from Prometheus . The study was partially supported by the NIDDK-funded San Diego Digestive Diseases Research Center (P30 DK120515). Parambir S. Dulai is supported by the AGA Research Scholar Award. The TAILORIX cohort was recruited in a prospective clinical trial by the GETAID, sponsored by Janssen Biologics and Merck Sharp and Dome. Prometheus was responsible for running assays and analyses. Primary clinical data and reference assessments for disease activity for the training and validation cohorts were collected independent of Prometheus by local coordinating sites.
Funding Information:
Conflicts of interest The authors disclose the following: Geert R. D'Haens has received consulting and/or lecture fees from AbbVie, Ablynx, Allergan, Alphabiomics, Amakem, Amgen, AM Pharma, Arena Pharmaceuticals, Biogen, Bristol-Myers Squibb, Boehringer Ingelheim, Celgene/Receptos, Celltrion, Echo Pharmaceuticals, Eli Lilly, Engene, Ferring, Dr Falk Pharma, Galapagos, Genentech/Roche, Gilead, GlaxoSmithKline, Gossamerbio, Pfizer, Immunic, Johnson & Johnson, Kintai Therapeutics, Millennium/Takeda, Medtronics, Mitsubishi Pharma, Merck Sharp Dome, Mundipharma, Nextbiotics, Novo Nordisk, Otsuka, Pfizer/Hospira, Photopill, Prodigest, Prometheus Laboratories/Nestle, Progenity, Protagonist, RedHill, Robarts Clinical Trials, Samsung Bioepis, Sandoz, Seres/Nestle, Setpoint, Shire, Takeda, Teva, Tigenix, Tillotts, Topivert, Versant and Vifor. Orlaith Kelly served on the tofacitinib advisory board Ireland 2018 and received an AbbVie CIHR/CAG Advanced IBD Fellowship Bursary award, Canada 2014 and 2015. Mark S. Silverberg has been a speaker for AbbVie, Janssen, Prometheus, Takeda, Shire, Pfizer/Hospira, Ferring, Novartis, Lilly; served on the advisory boards of AbbVie, Allergan, Janssen, Prometheus, Takeda, Shire, Pfizer/Hospira, Ferring; received research support for AbbVie, Janssen, Prometheus, Takeda, Pfizer/Hospira; and has served as a consultant for AbbVie, Janssen, Prometheus, Takeda, Pfizer/Hospira. David Laharie as served on the board of or received lectures fees from AbbVie, Celgene, Ferring, Janssen, Merck Sharpe & Dohme (MSD), Novartis, Pfizer, Roche, and Takeda. Edouard Louis has received research grants from Takeda and Pfizer; educational grants from AbbVie, MSD, Takeda; and speaker fees from AbbVie, Ferring, MSD, Chiesi, Falk, Takeda, Hospira, Janssen, Pfizer; has served on the advisory board for AbbVie, Ferring, MSD, Mitsubishi Pharma, Takeda, Celltrion, Celgene, Hospira, Janssen and as a consultant for AbbVie. Edoardo Savarino has received consulting/lecture fees from AbbVie, MSD, Takeda, Janssen, Sofar, Malesci. Giorgia Bodini has been an invited speaker for AbbVie, MSD, and Takeda. Andres Yarur has received consulting fees from Takeda Pharmaceuticals and Prometheus Laboratories and has served on the speakers bureau for AbbVie, Takeda Pharmaceuticals, and Prometheus Laboratories. Brigid S. Boland has received consulting fees from AbbVie and Prometheus Laboratories outside of the submitted work. Waqqas Afif has performed consulting for AbbVie, Janssen, Pfizer, Merck, Takeda, Shire, and Allergan and received research support AbbVie, Janssen, Theradiag, Prometheus, and Ferring. Severine Vermeire has received grant support from MSD, AbbVie, Pfizer, Johnson & Johnson, and Takeda; lecture fees from AbbVie, MSD, Ferring Pharmaceuticals, Takeda, Hospira;, and consultancy fees from AbbVie, Takeda, Pfizer, Ferring Pharmaceuticals, Shire Pharmaceuticals Group, Prometheus, MSD, Hospira, Mundipharma, Celgene, Galapagos, and Genentech/Roche. Siddharth Singh has received consulting fees from AbbVie, Pfizer, Takeda, and AMAG Pharmaceuticals. Angelina Collins has received consulting fees, and/or honoraria from AbbVie and Janssen. Mark A. Valasek received research support from Prometheus. William J. Sandborn has received research grants from Atlantic Healthcare Limited, Amgen, Genentech, Gilead Sciences, AbbVie, Janssen, Takeda, Lilly, Celgene/Receptos; consulting fees from AbbVie, Allergan, Amgen, Boehringer Ingelheim, Celgene, Conatus, Cosmo, Escalier Biosciences, Ferring, Genentech, Gilead, Janssen, Lilly, Miraca Life Sciences, Nivalis Therapeutics, Novartis Nutrition Science Partners, Oppilan Pharma, Otsuka, Paul Hastings, Pfizer, Precision IBD, Progenity, Prometheus Laboratories, Ritter Pharmaceuticals, Robarts Clinical Trials (owned by Health Academic Research Trust), Salix, Shire, Seres Therapeutics, Sigmoid Biotechnologies, Takeda, Tigenix, Tillotts Pharma, UCB Pharma, Vivelix; and stock options from Ritter Pharmaceuticals, Oppilan Pharma, Escalier Biosciences, Precision IBD, and Progenity. Parambir S. Dulai received research support, consulting fees, and honoraria from Takeda; received research support from Pfizer, and research support and consulting fees from Janssen. Michael Hale, Jessica Ho, Venkateswarlu Kondragunta, Benjamin Huang, Crystal Kuy, Lauren Okada, Xiao-Jun Li, Kelly D. Hester, Kurtis R. Bray, Larry Mimms, and Anjali Jain were all employees of Prometheus Laboratories Inc.Funding The University of California San Diego cohorts were recruited with support from a grant to William Sandborn and Parambir S. Dulai through the Litwin Pioneers Program Crohn's and Colitis Foundation and an unrestricted collaboration grant from Prometheus. The study was partially supported by the NIDDK-funded San Diego Digestive Diseases Research Center (P30 DK120515). Parambir S. Dulai is supported by the AGA Research Scholar Award. The TAILORIX cohort was recruited in a prospective clinical trial by the GETAID, sponsored by Janssen Biologics and Merck Sharp and Dome. Prometheus was responsible for running assays and analyses. Primary clinical data and reference assessments for disease activity for the training and validation cohorts were collected independent of Prometheus by local coordinating sites.
Publisher Copyright:
© 2020 AGA Institute
PY - 2020/2
Y1 - 2020/2
N2 - Background & Aims: Noninvasive tests to measure endoscopic activity in patients with Crohn's disease (CD) have limitations. We aimed to develop a test to identify patients in remission, based on endoscopic analysis, and monitor CD activity based on serum levels of proteins. Methods: We developed a test to measure 13 proteins in blood (ANG1, ANG2, CRP, SAA1, IL7, EMMPRIN, MMP1, MMP2, MMP3, MMP9, TGFA, CEACAM1, and VCAM1), called the endoscopic healing index [EHI], using samples from 278 patients with CD from a multinational training cohort. We validated the test using 2 independent cohorts of patients with CD: 116 biologic-naive patients with early-stage CD (validation cohort 1) and 195 biologic-exposed patients with chronic CD (validation cohort 2). The ability of the test to identify patients with active disease vs patients in remission (defined as a simple endoscopic score for CD of ≤2 and ≤1 in each segment, or a total CD endoscopic index of severity score <3) was assessed by using area under receiver operating characteristic curve (AUROC) analysis. The diagnostic accuracy of the test was compared with that of measurement of serum C-reactive protein (CRP) and fecal calprotectin. Results: The EHI scores range from 0 to 100 units; higher scores indicate more severe CD activity, based on endoscopy findings. The EHI identified patients in remission with an AUROC of 0.962 in validation cohort 1 (95% confidence interval, 0.942–0.982) and an AUROC of 0.693 in validation cohort 2 (95% confidence interval, 0.619–0.767), regardless of CD location or phenotype. A cutoff value of 20 points identified patients in remission with the highest level of sensitivity (97.1% in validation cohort 1 and 83.2% in validation cohort 2), with specificity values of 69.0% and 36.6%, respectively. A cutoff value of 50 points identified patients in remission with the highest level of specificity (100% in validation cohort 1 and 87.8% in validation cohort 2), with sensitivity values of 37.3% and 30.0%, respectively. The EHI identified patients in remission with a significantly higher AUROC value than the test for CRP (0.876, P < .001 in validation cohort 1 and 0.624, P = .109 in validation cohort 2). In analysis of patients with available FC measurements, the AUROC value for the EHI did not differ significantly from that of measurement of FC (AUROC, 0.950 for EHI vs AUROC, 0.923 for FC; P = .147 in validation cohort 1 and AUROC, 0.803 for EHI vs AUROC, 0.854 for FC; P = .298 in validation cohort 2). Conclusions: We developed an index called the EHI to identify patients with CD in endoscopic remission based on blood levels of 13 proteins. The EHI identified patients with resolution of endoscopic disease activity, with good overall accuracy, although with variation between the 2 cohorts assessed. The EHI AUROC values were comparable to measurement of FC and higher than measurement of serum CRP. The test might be used in practice to assess endoscopic activity in patients with CD.
AB - Background & Aims: Noninvasive tests to measure endoscopic activity in patients with Crohn's disease (CD) have limitations. We aimed to develop a test to identify patients in remission, based on endoscopic analysis, and monitor CD activity based on serum levels of proteins. Methods: We developed a test to measure 13 proteins in blood (ANG1, ANG2, CRP, SAA1, IL7, EMMPRIN, MMP1, MMP2, MMP3, MMP9, TGFA, CEACAM1, and VCAM1), called the endoscopic healing index [EHI], using samples from 278 patients with CD from a multinational training cohort. We validated the test using 2 independent cohorts of patients with CD: 116 biologic-naive patients with early-stage CD (validation cohort 1) and 195 biologic-exposed patients with chronic CD (validation cohort 2). The ability of the test to identify patients with active disease vs patients in remission (defined as a simple endoscopic score for CD of ≤2 and ≤1 in each segment, or a total CD endoscopic index of severity score <3) was assessed by using area under receiver operating characteristic curve (AUROC) analysis. The diagnostic accuracy of the test was compared with that of measurement of serum C-reactive protein (CRP) and fecal calprotectin. Results: The EHI scores range from 0 to 100 units; higher scores indicate more severe CD activity, based on endoscopy findings. The EHI identified patients in remission with an AUROC of 0.962 in validation cohort 1 (95% confidence interval, 0.942–0.982) and an AUROC of 0.693 in validation cohort 2 (95% confidence interval, 0.619–0.767), regardless of CD location or phenotype. A cutoff value of 20 points identified patients in remission with the highest level of sensitivity (97.1% in validation cohort 1 and 83.2% in validation cohort 2), with specificity values of 69.0% and 36.6%, respectively. A cutoff value of 50 points identified patients in remission with the highest level of specificity (100% in validation cohort 1 and 87.8% in validation cohort 2), with sensitivity values of 37.3% and 30.0%, respectively. The EHI identified patients in remission with a significantly higher AUROC value than the test for CRP (0.876, P < .001 in validation cohort 1 and 0.624, P = .109 in validation cohort 2). In analysis of patients with available FC measurements, the AUROC value for the EHI did not differ significantly from that of measurement of FC (AUROC, 0.950 for EHI vs AUROC, 0.923 for FC; P = .147 in validation cohort 1 and AUROC, 0.803 for EHI vs AUROC, 0.854 for FC; P = .298 in validation cohort 2). Conclusions: We developed an index called the EHI to identify patients with CD in endoscopic remission based on blood levels of 13 proteins. The EHI identified patients with resolution of endoscopic disease activity, with good overall accuracy, although with variation between the 2 cohorts assessed. The EHI AUROC values were comparable to measurement of FC and higher than measurement of serum CRP. The test might be used in practice to assess endoscopic activity in patients with CD.
KW - IBD
KW - Monitr
KW - Resolution
KW - Response to Treatment
UR - http://www.scopus.com/inward/record.url?scp=85078832608&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85078832608&partnerID=8YFLogxK
U2 - 10.1053/j.gastro.2019.10.034
DO - 10.1053/j.gastro.2019.10.034
M3 - Article
C2 - 31711925
AN - SCOPUS:85078832608
SN - 0016-5085
VL - 158
SP - 515-526.e10
JO - Gastroenterology
JF - Gastroenterology
IS - 3
ER -