Development and validation of MicrobEx: an open-source package for microbiology culture concept extraction

Keyphrases

• Microbiology 100%
• Cultural Concepts 100%
• Concept Extraction 100%
• Microbiological Culture 100%
• Open-source Package 100%
• Free Text 60%
• Bacterial Species 40%
• Bacterial Culture 40%
• Customization 40%
• Classification Task 40%
• Public Health 20%
• Clinical Application 20%
• Python Package 20%
• Healthcare Organizations 20%
• Clinical Health 20%
• Rule-based 20%
• Upstream Process 20%
• Machine Learning 20%
• Software Solution 20%
• Clinical Decision Support 20%
• GitHub 20%
• Electronic Health Record System 20%
• Algorithm Performance 20%
• Health Applications 20%
• Status Assessment 20%
• Positive Culture 20%
• MetaMap 20%
• Validation Set 20%
• Free-text Data 20%
• Secondary Use 20%
• Natural Language Processing Algorithm 20%
• F1 Score 20%
• Benchmark Algorithms 20%
• Disease Surveillance System 20%
• PyPI 20%

Medicine and Dentistry

• Bacterium Culture 100%
• Medicine 100%
• Electronic Health Record 50%
• Disease Surveillance 50%
• Clinical Health 50%
• Language Processing 50%
• Public Health 50%
• Surveillance System 50%
• Bacterial Extract 50%

Immunology and Microbiology

• Microbiology 100%
• Bacterium Culture 28%
• Pythonidae 14%
• Solution and Solubility 14%
• Electronic Health Record 14%
• Natural Language Processing 14%