dictyBase - A Dictyostelium bioinformatics resource update

Petra Fey; Pascale Gaudet; Tomaz Curk; Blaz Zupan; Eric M. Just; Siddhartha Basu; Sohel N. Merchant; Yulia A. Bushmanova; Gad Shaulsky; Warren A. Kibbe; Rex I. Chisholm

doi:10.1093/nar/gkn844

dictyBase - A Dictyostelium bioinformatics resource update

Petra Fey, Pascale Gaudet, Tomaz Curk, Blaz Zupan, Eric M. Just, Siddhartha Basu, Sohel N. Merchant, Yulia A. Bushmanova, Gad Shaulsky, Warren A. Kibbe, Rex I. Chisholm

FSM Office for Research

Research output: Contribution to journal › Article › peer-review

63 Scopus citations

Abstract

dictyBase (http://dictybase.org) is the model organism database for Dictyostelium discoideum. It houses the complete genome sequence, ESTs and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome. This dictyBase update describes the annotations and features implemented since 2006, including improved strain and phenotype representation, integration of predicted transcriptional regulatory elements, protein domain information, biochemical pathways, improved searching and a wiki tool that allows members of the research community to provide annotations.

Original language	English (US)
Pages (from-to)	D515-D519
Journal	Nucleic acids research
Volume	37
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkn844
State	Published - 2009

Funding

National Institutes of Health (GM64426 and HG0022) (R.L.C.), (P01-HD39691) (T.C., B.Z., G.S.) and the Slovenian Research Agency (P2-0209, J2-9699) (T.C., B.Z.) (partial). Funding for open access charge: National Institutes of Health.

ASJC Scopus subject areas

Genetics

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10.1093/nar/gkn844

Cite this

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title = "dictyBase - A Dictyostelium bioinformatics resource update",

abstract = "dictyBase (http://dictybase.org) is the model organism database for Dictyostelium discoideum. It houses the complete genome sequence, ESTs and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome. This dictyBase update describes the annotations and features implemented since 2006, including improved strain and phenotype representation, integration of predicted transcriptional regulatory elements, protein domain information, biochemical pathways, improved searching and a wiki tool that allows members of the research community to provide annotations.",

author = "Petra Fey and Pascale Gaudet and Tomaz Curk and Blaz Zupan and Just, {Eric M.} and Siddhartha Basu and Merchant, {Sohel N.} and Bushmanova, {Yulia A.} and Gad Shaulsky and Kibbe, {Warren A.} and Chisholm, {Rex I.}",

note = "Funding Information: National Institutes of Health (GM64426 and HG0022) (R.L.C.), (P01-HD39691) (T.C., B.Z., G.S.) and the Slovenian Research Agency (P2-0209, J2-9699) (T.C., B.Z.) (partial). Funding for open access charge: National Institutes of Health.",

year = "2009",

doi = "10.1093/nar/gkn844",

language = "English (US)",

volume = "37",

pages = "D515--D519",

journal = "Nucleic acids research",

issn = "0305-1048",

publisher = "Oxford University Press",

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AU - Fey, Petra

AU - Gaudet, Pascale

AU - Curk, Tomaz

AU - Zupan, Blaz

AU - Just, Eric M.

AU - Basu, Siddhartha

AU - Merchant, Sohel N.

AU - Bushmanova, Yulia A.

AU - Shaulsky, Gad

AU - Kibbe, Warren A.

AU - Chisholm, Rex I.

N1 - Funding Information: National Institutes of Health (GM64426 and HG0022) (R.L.C.), (P01-HD39691) (T.C., B.Z., G.S.) and the Slovenian Research Agency (P2-0209, J2-9699) (T.C., B.Z.) (partial). Funding for open access charge: National Institutes of Health.

PY - 2009

Y1 - 2009

N2 - dictyBase (http://dictybase.org) is the model organism database for Dictyostelium discoideum. It houses the complete genome sequence, ESTs and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome. This dictyBase update describes the annotations and features implemented since 2006, including improved strain and phenotype representation, integration of predicted transcriptional regulatory elements, protein domain information, biochemical pathways, improved searching and a wiki tool that allows members of the research community to provide annotations.

AB - dictyBase (http://dictybase.org) is the model organism database for Dictyostelium discoideum. It houses the complete genome sequence, ESTs and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome. This dictyBase update describes the annotations and features implemented since 2006, including improved strain and phenotype representation, integration of predicted transcriptional regulatory elements, protein domain information, biochemical pathways, improved searching and a wiki tool that allows members of the research community to provide annotations.

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ER -

dictyBase - A Dictyostelium bioinformatics resource update

Abstract

Funding

ASJC Scopus subject areas

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