Enzyme-Directed Functionalization of Designed, Two-Dimensional Protein Lattices

Rohit H. Subramanian, Yuta Suzuki, Lorillee Tallorin, Swagat Sahu, Matthew Thompson, Nathan C. Gianneschi, Michael D. Burkart, F. Akif Tezcan*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

9 Scopus citations

Abstract

The design and construction of crystalline protein arrays to selectively assemble ordered nanoscale materials have potential applications in sensing, catalysis, and medicine. Whereas numerous designs have been implemented for the bottom-up construction of protein assemblies, the generation of artificial functional materials has been relatively unexplored. Enzyme-directed post-translational modifications are responsible for the functional diversity of the proteome and, thus, could be harnessed to selectively modify artificial protein assemblies. In this study, we describe the use of phosphopantetheinyl transferases (PPTases), a class of enzymes that covalently modify proteins using coenzyme A (CoA), to site-selectively tailor the surface of designed, two-dimensional (2D) protein crystals. We demonstrate that a short peptide (ybbR) or a molecular tag (CoA) can be covalently tethered to 2D arrays to enable enzymatic functionalization using Sfp PPTase. The site-specific modification of two different protein array platforms is facilitated by PPTases to afford both small molecule- and protein-functionalized surfaces with no loss of crystalline order. This work highlights the potential for chemoenzymatic modification of large protein surfaces toward the generation of sophisticated protein platforms reminiscent of the complex landscape of cell surfaces.

Original languageEnglish (US)
Pages (from-to)1050-1062
Number of pages13
JournalBiochemistry
Volume60
Issue number13
DOIs
StatePublished - Apr 6 2021

Funding

Protein design and synthesis, TEM imaging and analysis, and biochemical analyses were supported by the U.S. Department of Energy (Division of Materials Sciences, Office of Basic Energy Sciences, DE-SC0003844). Small molecule and peptide synthesis and characterization of chemically conjugated RIDC3 proteins were supported by AFOSR through a Basic Research Initiative (BRI) grant (FA9550-12-1-0414). R.H.S. was supported by the National Institute of Health Chemical Biology Interfaces Training Grant T32GM112584-01. TEM data were collected at the University of California, San Diego, EM facilities supported by funding to T. S. Baker from the National Institutes of Health (R01-GM033050) and the Agouron Foundation.

ASJC Scopus subject areas

  • Biochemistry

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