ICMA: An integrated cardiac modeling and analysis platform

Jagir R. Hussan*, Peter J. Hunter, Patrick A. Gladding, Neil Greenberg, Richard Christie, Alan Wu, Hugh Sorby, James D. Thomas

*Corresponding author for this work

Research output: Contribution to journalArticle

Abstract

Summary: ICMA, a software framework to create 3D finite element models of the left ventricle from cardiac ultrasound or magnetic resonance imaging (MRI) data, has been made available as an open-source code. The framework is hardware vendor independent and uses speckle tracking (endocardial border detection) on ultrasound (MRI) imaging data in the form of DICOM. Standard American Heart Association segment-based strain analysis can be performed using a browser-based interface. The speckle tracking, border detection and model fitting methods are implemented in C++ using open-source tools. They are wrapped as web services and orchestrated via a JBOSS-based application server. Availability and implementation: The source code for ICMA is freely available under MPL 1.1 or GPL 2.0 or LGPL 2.1 license at https://github.com/ABI-Software-Laboratory/ICMA and a standalone virtual machine at http://goo.gl/M4lJKH for download.

Original languageEnglish (US)
Pages (from-to)1331-1333
Number of pages3
JournalBioinformatics
Volume31
Issue number8
DOIs
StatePublished - Apr 15 2015

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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    Hussan, J. R., Hunter, P. J., Gladding, P. A., Greenberg, N., Christie, R., Wu, A., Sorby, H., & Thomas, J. D. (2015). ICMA: An integrated cardiac modeling and analysis platform. Bioinformatics, 31(8), 1331-1333. https://doi.org/10.1093/bioinformatics/btu809