Inflamed immune phenotype predicts favorable clinical outcomes of immune checkpoint inhibitor therapy across multiple cancer types

Jeanne Shen*, Yoon La Choi, Taebum Lee, Hyojin Kim, Young Kwang Chae, Ben W. Dulken, Stephanie Bogdan, Maggie Huang, George A. Fisher, Sehhoon Park, Se Hoon Lee, Jun Eul Hwang, Jin Haeng Chung, Leeseul Kim, Heon Song, Sergio Pereira, Seunghwan Shin, Yoojoo Lim, Chang Ho Ahn, Seulki KimChiyoon Oum, Sukjun Kim, Gahee Park, Sanghoon Song, Wonkyung Jung, Seokhwi Kim, Yung Jue Bang, Tony S.K. Mok, Siraj M. Ali, Chan Young Ock*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

Background The inflamed immune phenotype (IIP), defined by enrichment of tumor-infiltrating lymphocytes (TILs) within intratumoral areas, is a promising tumor-agnostic biomarker of response to immune checkpoint inhibitor (ICI) therapy. However, it is challenging to define the IIP in an objective and reproducible manner during manual histopathologic examination. Here, we investigate artificial intelligence (AI)-based immune phenotypes capable of predicting ICI clinical outcomes in multiple solid tumor types. Methods Lunit SCOPE IO is a deep learning model which determines the immune phenotype of the tumor microenvironment based on TIL analysis. We evaluated the correlation between the IIP and ICI treatment outcomes in terms of objective response rates (ORR), progression-free survival (PFS), and overall survival (OS) in a cohort of 1,806 ICI-treated patients representing over 27 solid tumor types retrospectively collected from multiple institutions. Results We observed an overall IIP prevalence of 35.2% and significantly more favorable ORRs (26.3% vs 15.8%), PFS (median 5.3 vs 3.1 months, HR 0.68, 95% CI 0.61 to 0.76), and OS (median 25.3 vs 13.6 months, HR 0.66, 95% CI 0.57 to 0.75) after ICI therapy in IIP compared with non-IIP patients, respectively (p<0.001 for all comparisons). On subgroup analysis, the IIP was generally prognostic of favorable PFS across major patient subgroups, with the exception of the microsatellite unstable/mismatch repair deficient subgroup. Conclusion The AI-based IIP may represent a practical, affordable, clinically actionable, and tumor-agnostic biomarker prognostic of ICI therapy response across diverse tumor types.

Original languageEnglish (US)
Article number2024;12:e008339
JournalJournal for immunotherapy of cancer
Volume12
Issue number2
DOIs
StatePublished - Feb 14 2024

Funding

Funding for this study was provided by Lunit Inc., with additional infrastructural support from the Stanford Center for Artificial Intelligence in Medicine & Imaging (AIMI) and the Department of Pathology, Stanford University School of Medicine. JS additionally received support from the United States National Cancer Institute (NCI), National Institutes of Health (NIH) (R01 CA270437). JS and SB received institutional research funding from Lunit, Inc. HS, SP, SSh, YL, CHO, Seulki Kim, CO, Sukjun Kim, GP, SSo, WJ, SA and C-YO are employees of Lunit, Inc. Y-JB. is a Consultant/Advisory Board member for Merck Sharp and Dohme (MSD), Merck Serono, Daiichi-Sankyo, Astellas, Alexo Oncology, Samyang Biopharm, Hanmi, Daewoong, and Amgen, and received institutional research grants for clinical trials from Genentech/Roche, MSD, Merck Serono, Daiichi Sankyo, Astellas, and Amgen in the past 3 years. Other authors declare no potential conflicts of interest.

ASJC Scopus subject areas

  • Immunology and Allergy
  • Immunology
  • Molecular Medicine
  • Oncology
  • Pharmacology
  • Cancer Research

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