Interactions at the Dimer Interface Influence the Relative Efficiencies for Purine Nucleotide Synthesis and Pyrophosphorolysis in a Phosphoribosyltransferase

Bhutorn Canyuk, Francisco J. Medrano, Mary Anne Wenck, Pamela J. Focia, Ann E. Eakin, Sydney P. Craig*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

31 Scopus citations

Abstract

Enzymes that salvage 6-oxopurines, including hypoxanthine phosphoribosyltransferases (HPRTs), are potential targets for drugs in the treatment of diseases caused by protozoan parasites. For this reason, a number of high-resolution X-ray crystal structures of the HPRTs from protozoa have been reported. Although these structures did not reveal why HPRTs need to form dimers for catalysis, they revealed the existence of potentially relevant interactions involving residues in a loop of amino acid residues adjacent to the dimer interface, but the contributions of these interactions to catalysis remained poorly understood. The loop, referred to as active-site loop I, contains an unusual non-proline cis-peptide and is composed of residues that are structurally analogous with Leu67, Lys68, and Gly69 in the human HPRT. Functional analyses of site-directed mutations (K68D, K68E, K68N, K68P, and K68R) in the HPRT from Trypanosoma cruzi, etiologic agent of Chagas' disease, show that the side-chain at position 68 can differentially influence the K m values for all four substrates as well as the kcat values for both IMP formation and pyrophosphorolysis. Also, the results for the K68P mutant are inconsistent with a cis-trans peptide isomerization-assisted catalytic mechanism. These data, together with the results of structural studies of the K68R mutant, reveal that the side-chain of residue 68 does not participate directly in reaction chemistry, but it strongly influences the relative efficiencies for IMP formation and pyrophosphorolysis, and the prevalence of lysine at position 68 in the HPRT of the majority of eukaryotes is consistent with there being a biological role for nucleotide pyrophosphorolysis.

Original languageEnglish (US)
Pages (from-to)905-921
Number of pages17
JournalJournal of Molecular Biology
Volume335
Issue number4
DOIs
StatePublished - Jan 23 2004

Funding

This work was supported by National Institutes of Health (NIH) grant numbers AI-38919 and AI45021. We thank Olivier Frolich of Novartis Products, Inc. for providing the HPP used in generating the ternary complex crystal structures and Jan Hermans of the University of North Carolina at Chapel Hill for helpful discussions. Crystallographic data were measured at three synchrotron beamlines: beamline 7-1 of the Stanford Synchrotron Radiation Laboratory (SSRL), beamline X12B of the National Synchrotron Light Source (NSLS) at the Brookhaven National Laboratory, and at the DuPont-Northwestern-Dow Collaborative Access Team (DND-CAT), beamline 5-IDB of the Advanced Photon Source (APS) at Argonne National Laboratory. SSRL is supported by the US Department of Energy, Office of Basic Sciences, Office of Environmental Research, and by the NIH, National Center for Research Resources, Biomedical Technology Program and the National Institute of General Medical Sciences. NSLS is supported by the Department of Energy, Division of Materials Sciences and the Division of Chemical Sciences. DND-CAT is supported by E. I. DuPont de Nemours & Co., The Dow Chemical Company, the US National Science Foundation (grant DMR-9304725 and the State of Illinois, Department of Commerce and Board of Higher Education (grant IBHE HECA NWU 96). APS was supported by the US Department of Energy, basic Energy Sciences, Office of Energy Research (Contract # W-31-102-Eng-38).

Keywords

  • Evolution
  • Hypoxanthine
  • Mutagenesis
  • Phosphoribosyltransferase
  • Structure

ASJC Scopus subject areas

  • Molecular Biology
  • Structural Biology

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