Mantis: A program for the analysis of x-ray spectromicroscopy data

Mirna Lerotic, Rachel Mak, Sue Wirick, Florian Meirer, Chris Jacobsen

Research output: Contribution to journalArticle

38 Scopus citations

Abstract

Spectromicroscopy combines spectral data with microscopy, where typical datasets consist of a stack of images taken across a range of energies over a microscopic region of the sample. Manual analysis of these complex datasets can be time-consuming, and can miss the important traits in the data. With this in mind we have developed MANTiS, an open-source tool developed in Python for spectromicroscopy data analysis. The backbone of the package involves principal component analysis and cluster analysis, classifying pixels according to spectral similarity. Our goal is to provide a data analysis tool which is comprehensive, yet intuitive and easy to use. MANTiS is designed to lead the user through the analysis using story boards that describe each step in detail so that both experienced users and beginners are able to analyze their own data independently. These capabilities are illustrated through analysis of hard X-ray imaging of iron in Roman ceramics, and soft X-ray imaging of a malaria-infected red blood cell.

Original languageEnglish (US)
Pages (from-to)1206-1212
Number of pages7
JournalJournal of Synchrotron Radiation
Volume21
Issue number5
DOIs
StatePublished - Sep 2014

Keywords

  • NEXAFS
  • X-ray microscopy
  • X-ray spectromicroscopy
  • XANES

ASJC Scopus subject areas

  • Radiation
  • Nuclear and High Energy Physics
  • Instrumentation

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