Multiple signals at the extended 8p23 locus are associated with susceptibility to systemic lupus erythematosus

F. Yesim Demirci*, Xingbin Wang, David L. Morris, Eleanor Feingold, Sasha Bernatsky, Christian Pineau, Ann Clarke, Rosalind Ramsey-Goldman, Susan Manzi, Timothy J. Vyse, M. Ilyas Kamboh

*Corresponding author for this work

Research output: Contribution to journalArticle

3 Scopus citations

Abstract

Background A major systemic lupus erythematosus (SLE) susceptibility locus lies within a common inversion polymorphism region (encompassing 3.8-4.5 Mb) located at 8p23. Initially implicated genes included FAM167A-BLK and XKR6, of which BLK received major attention due to its known role in B-cell biology. Recently, additional SLE risk carried in non-inverted background was also reported. Objective and methods In this case-control study, we further investigated the 'extended' 8p23 locus (~4 Mb) where we observed multiple SLE signals and assessed these signals for their relation to the inversion affecting this region. The study involved a North American discovery data set (~1200 subjects) and a replication data set (>10 000 subjects) comprising European-descent individuals. Results Meta-analysis of 8p23 SNPs, with p<0.05 in both data sets, identified 51 genome-wide significant SNPs (p<5.0×10-8). While most of these SNPs were related to previously implicated signals (XKR6-FAM167ABLK subregion), our results also revealed two 'new' SLE signals, including SGK223-CLDN23-MFHAS1 (6.06×10-9≤meta p≤4.88×10-8) and CTSB (meta p=4.87×10-8) subregions that are located >2 Mb upstream and ~0.3 Mb downstream from previously reported signals. Functional assessment of relevant SNPs indicated putative cis-effects on the expression of various genes at 8p23. Additional analyses in discovery sample, where the inversion genotypes were inferred, replicated the association of non-inverted status with SLE risk and suggested that a number of SLE risk alleles are predominantly carried in non-inverted background. Conclusions Our results implicate multiple (known+novel) SLE signals/genes at the extended 8p23 locus, beyond previously reported signals/genes, and suggest that this broad locus contributes to SLE risk through the effects of multiple genes/pathways.

Original languageEnglish (US)
Pages (from-to)381-389
Number of pages9
JournalJournal of medical genetics
Volume54
Issue number6
DOIs
StatePublished - Jun 1 2017

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

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    Yesim Demirci, F., Wang, X., Morris, D. L., Feingold, E., Bernatsky, S., Pineau, C., Clarke, A., Ramsey-Goldman, R., Manzi, S., Vyse, T. J., & Ilyas Kamboh, M. (2017). Multiple signals at the extended 8p23 locus are associated with susceptibility to systemic lupus erythematosus. Journal of medical genetics, 54(6), 381-389. https://doi.org/10.1136/jmedgenet-2016-104247