One stop shop for everything Dictyostelium: DictyBase and the Dicty Stock Center in 2012

Petra Fey, Robert J. Dodson, Siddhartha Basu, Rex L. Chisholm

Research output: Chapter in Book/Report/Conference proceedingChapter

78 Scopus citations

Abstract

dictyBase (http://dictybase.org), the model organism database for Dictyostelium discoideum, includes the complete genome sequence and expression data for this organism. Relevant literature is integrated into the database, and gene models and functional annotation are manually curated from experimental results and comparative multigenome analyses. dictyBase has recently expanded to include the genome sequences of three additional Dictyostelids and has added new software tools to facilitate multigenome comparisons. The Dicty Stock Center, a strain and plasmid repository for Dictyostelium research, has relocated to Northwestern University in 2009. This allowed us integrating all Dictyostelium resources to better serve the research community. In this chapter, we will describe how to navigate the Web site and highlight some of our newer improvements.

Original languageEnglish (US)
Title of host publicationDictyostelium discoideum Protocols
EditorsLudwig Eichinger, Francisco Rivero
Pages59-92
Number of pages34
DOIs
StatePublished - 2013

Publication series

NameMethods in Molecular Biology
Volume983
ISSN (Print)1064-3745

Keywords

  • BLAST
  • Database
  • Dictyostelium discoideum
  • Functional annotation
  • Gene page
  • Genome Browser
  • Genomic sequence
  • Multigenome
  • Phenotypes
  • Strains

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

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