Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America

Pavel Flegontov*, N. Ezgi Altınışık, Piya Changmai, Nadin Rohland, Swapan Mallick, Nicole Adamski, Deborah A. Bolnick, Nasreen Broomandkhoshbacht, Francesca Candilio, Brendan J. Culleton, Olga Flegontova, T. Max Friesen, Choongwon Jeong, Thomas K. Harper, Denise Keating, Douglas J. Kennett, Alexander M. Kim, Thiseas C. Lamnidis, Ann Marie Lawson, Iñigo OlaldeJonas Oppenheimer, Ben A. Potter, Jennifer Raff, Robert A. Sattler, Pontus Skoglund, Kristin Stewardson, Edward J. Vajda, Sergey Vasilyev, Elizaveta Veselovskaya, M. Geoffrey Hayes, Dennis H. O’Rourke, Johannes Krause, Ron Pinhasi, David Reich, Stephan Schiffels

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

113 Scopus citations

Abstract

Much of the American Arctic was first settled 5,000 years ago, by groups of people known as Palaeo-Eskimos. They were subsequently joined and largely displaced around 1,000 years ago by ancestors of the present-day Inuit and Yup’ik1–3. The genetic relationship between Palaeo-Eskimos and Native American, Inuit, Yup’ik and Aleut populations remains uncertain4–6. Here we present genomic data for 48 ancient individuals from Chukotka, East Siberia, the Aleutian Islands, Alaska, and the Canadian Arctic. We co-analyse these data with data from present-day Alaskan Iñupiat and West Siberian populations and published genomes. Using methods based on rare-allele and haplotype sharing, as well as established techniques4,7–9, we show that Palaeo-Eskimo-related ancestry is ubiquitous among people who speak Na-Dene and Eskimo–Aleut languages. We develop a comprehensive model for the Holocene peopling events of Chukotka and North America, and show that Na-Dene-speaking peoples, people of the Aleutian Islands, and Yup’ik and Inuit across the Arctic region all share ancestry from a single Palaeo-Eskimo-related Siberian source.

Original languageEnglish (US)
Pages (from-to)236-240
Number of pages5
JournalNature
Volume570
Issue number7760
DOIs
StatePublished - Jun 13 2019

Funding

Acknowledgements We acknowledge the ancient people whose skeletal samples were studied, the Aleut Corporation, the Aleutians Pribilof Islands Association, and the Chaluka Corporation for granting permissions to conduct genetic analyses on the eastern Aleutians. We thank the staff at the Smithsonian Institution’s National Museum of Natural History for facilitating the sample collection; the McGrath Native Village Council and MTNT Ltd for granting permissions to conduct genetic analyses on the Tochak McGrath remains; J. Clark, who performed biological age estimates on these remains; the research participants in Alaska (Genetics of Alaskan North Slope (GeANS) project funded by NSF OPP-0732857) and West Siberia who donated samples for genome-wide analysis; J. B. Coltrain for sharing data on stable isotopes; and J. W. Ives, J. Tackney, L. Norman, and K. TallBear for comments on earlier drafts of this paper. Sample collection and the initial molecular, isotopic, and accelerator mass spectrometry (AMS) 14C dating of the samples described here were funded by National Science Foundation Office of Polar Program grants OPP-9726126, OPP-9974623, and OPP-0327641; the Natural Sciences and Engineering Research Council of Canada; and the Wenner-Gren Foundation for Anthropological Research (6364). This work was supported by the Czech Ministry of Education, Youth and Sports from the project ‘IT4Innovations National Supercomputing Center – LM2015070’. P.F., P.C., O.F., and N.E.A. were supported by the Institutional Development Program of the University of Ostrava; P.F. and P.C. were supported by the EU Operational Programme ‘Research and Development for Innovations’ (CZ.1.05/2.1.00/19.0388) and P.C. was also supported by the Statutory City of Ostrava (0924/2016/ŠaS) and the Moravian-Silesian Region (01211/2016/RRC); P.S. was funded by the Francis Crick Institute, which receives its core funding from Cancer Research UK (FC001595), the UK Medical Research Council (FC001595), and the Wellcome Trust (FC001595); D.R. was funded by NSF HOMINID (grant BCS-1032255), NIH (NIGMS), the Allen Discovery Center of the Paul Allen Foundation (grant GM100233), and is an Investigator of the Howard Hughes Medical Institute; D.A.B. was supported by a Norman Hackerman Advanced Research Program grant from the Texas Higher Education Coordinating Board; AMS 14C work at Pennsylvania State University by D.J.K. and B.J.C was funded by the NSF Archaeometry programme (BCS-1460369); and C.J., T.C.L., J.K., and S.S. were supported by the Max Planck Society.

ASJC Scopus subject areas

  • General

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