TY - JOUR
T1 - Phylogenetics Identifies Two Eumetazoan TRPM Clades and an Eighth TRP Family, TRP Soromelastatin (TRPS)
AU - Himmel, Nathaniel J.
AU - Gray, Thomas R.
AU - Cox, Daniel N.
AU - Ruvinsky, Ilya
N1 - Funding Information:
We thank Dr Charles Derby and Mihika Kozma (Georgia State University) for critically assessing the original manuscript, Dr Surajit Bhattacharya (Children’s Research Institute) for bioin-formatics advice, four anonymous peer reviewers for feedback during the peer-review process, and the PhyloPic repository, the source for many of the animal silhouettes used throughout (distributed in public domain). We also thank all the investigators who made sequence information public, which made this work possible. This work is supported by the National Institute of Neurological Disorders and Stroke at the NIH (R01NS115209 to D.N.C.), the National Institute of General Medical Sciences at the NIH (R25GM109442-01A1), a GSU Brains and Behavior Fellowship (to N.J.H.), a GSU Brains and Behavior Seed (to D.N.C.), and a Kenneth W. and Georgeanne F. Honeycutt Fellowship (to N.J.H.).
Publisher Copyright:
© 2020 The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.
PY - 2020/7/1
Y1 - 2020/7/1
N2 - Transient receptor potential melastatins (TRPMs) are most well known as cold and menthol sensors, but are in fact broadly critical for life, from ion homeostasis to reproduction. Yet, the evolutionary relationship between TRPM channels remains largely unresolved, particularly with respect to the placement of several highly divergent members. To characterize the evolution of TRPM and like channels, we performed a large-scale phylogenetic analysis of >1,300 TRPM-like sequences from 14 phyla (Annelida, Arthropoda, Brachiopoda, Chordata, Cnidaria, Echinodermata, Hemichordata, Mollusca, Nematoda, Nemertea, Phoronida, Priapulida, Tardigrada, and Xenacoelomorpha), including sequences from a variety of recently sequenced genomes that fill what would otherwise be substantial taxonomic gaps. These findings suggest: 1) the previously recognized TRPM family is in fact two distinct families, including canonical TRPM channels and an eighth major previously undescribed family of animal TRP channel, TRP soromelastatin; 2) two TRPM clades predate the last bilaterian-cnidarian ancestor; and 3) the vertebrate-centric trend of categorizing TRPM channels as 1-8 is inappropriate for most phyla, including other chordates.
AB - Transient receptor potential melastatins (TRPMs) are most well known as cold and menthol sensors, but are in fact broadly critical for life, from ion homeostasis to reproduction. Yet, the evolutionary relationship between TRPM channels remains largely unresolved, particularly with respect to the placement of several highly divergent members. To characterize the evolution of TRPM and like channels, we performed a large-scale phylogenetic analysis of >1,300 TRPM-like sequences from 14 phyla (Annelida, Arthropoda, Brachiopoda, Chordata, Cnidaria, Echinodermata, Hemichordata, Mollusca, Nematoda, Nemertea, Phoronida, Priapulida, Tardigrada, and Xenacoelomorpha), including sequences from a variety of recently sequenced genomes that fill what would otherwise be substantial taxonomic gaps. These findings suggest: 1) the previously recognized TRPM family is in fact two distinct families, including canonical TRPM channels and an eighth major previously undescribed family of animal TRP channel, TRP soromelastatin; 2) two TRPM clades predate the last bilaterian-cnidarian ancestor; and 3) the vertebrate-centric trend of categorizing TRPM channels as 1-8 is inappropriate for most phyla, including other chordates.
KW - TRPM
KW - TRPS
KW - ced-11
KW - channel evolution
KW - phylogenetics
KW - transient receptor potential
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U2 - 10.1093/molbev/msaa065
DO - 10.1093/molbev/msaa065
M3 - Article
C2 - 32159767
AN - SCOPUS:85086793267
SN - 0737-4038
VL - 37
SP - 2034
EP - 2044
JO - Molecular biology and evolution
JF - Molecular biology and evolution
IS - 7
ER -