TY - JOUR
T1 - Rapid reconstruction of four-dimensional mr angiography of the thoracic aorta using a convolutional neural network
AU - Haji-Valizadeh, Hassan
AU - Shen, Daming
AU - Avery, Ryan J.
AU - Serhal, Ali M.
AU - Schiffers, Florian A.
AU - Katsaggelos, Aggelos K.
AU - Cossairt, Oliver S.
AU - Kim, Daniel
N1 - Funding Information:
Disclosures of Conflicts of Interest: H.H.V. disclosed no relevant relationships. D.S. disclosed no relevant relationships. R.J.A. disclosed no relevant relationships. A.M.S. disclosed no relevant relationships. F.A.S. disclosed no relevant relationships. A.K.K. disclosed no relevant relationships. O.S.C. Activities related to the present article: disclosed no relevant relationships. Activities not related to the present article: employed by Northwestern University. Other relationships: disclosed no relevant relationships. D.K. Activities related to the present article: institution receives grants from NIH (R01HL116895, R01HL138578, R21EB024315, R21AG055954) and American Heart Association (19IPLOI34760317) (funding from NIH and AHA supported some of the authors while working on this project). Activities not related to the present article: disclosed no relevant relationships. Other relationships: disclosed no relevant relationships.
Funding Information:
Supported in part by the National Institutes of Health (grants R01HL116895, R01HL138578, R21EB024315, and R21AG055954) and the American Heart Association (grant 19IPLOI34760317).
Publisher Copyright:
©RSNA, 2020.
PY - 2020/6
Y1 - 2020/6
N2 - Purpose: To implement an integrated reconstruction pipeline including a graphics processing unit (GPU)–based convolutional neural network (CNN) architecture and test whether it reconstructs four-dimensional non-Cartesian, non–contrast material–enhanced MR angiographic k-space data faster than a central processing unit (CPU)–based compressed sensing (CS) reconstruction pipeline, without significant losses in data fidelity, summed visual score (SVS), or arterial vessel–diameter measurements. Materials and Methods: Raw k-space data of 24 patients (18 men and six women; mean age, 56.8 years 6 11.8 [standard deviation]) suspected of having thoracic aortic disease were used to evaluate the proposed reconstruction pipeline derived from an open-source threedimensional CNN. For training, 4800 zero-filled images and the corresponding CS-reconstructed images from 10 patients were used as input-output pairs. For testing, 6720 zero-filled images from 14 different patients were used as inputs to a trained CNN. Metrics for evaluating the agreement between the CNN and CS images included reconstruction times, structural similarity index (SSIM) and normalized root-mean-square error (NRMSE), SVS (3 = nondiagnostic, 9 = clinically acceptable, 15 = excellent), and vessel diameters. Results: The mean reconstruction time was 65 times and 69 times shorter for the CPU-based and GPU-based CNN pipelines (216.6 seconds 6 40.5 and 204.9 seconds 6 40.5), respectively, than for CS (14 152.3 seconds 6 1708.6) (P, .001). Compared with CS as practical ground truth, CNNs produced high data fidelity (SSIM = 0.94 6 0.02, NRMSE = 2.8% 6 0.4) and not significantly different (P = .25) SVS and aortic diameters, except at one out of seven locations, where the percentage difference was only 3% (ie, clinically irrelevant). Conclusion: The proposed integrated reconstruction pipeline including a CNN architecture is capable of rapidly reconstructing timeresolved volumetric cardiovascular MRI k-space data, without a significant loss in data quality, thereby supporting clinical translation of said non–contrast-enhanced MR angiograms.
AB - Purpose: To implement an integrated reconstruction pipeline including a graphics processing unit (GPU)–based convolutional neural network (CNN) architecture and test whether it reconstructs four-dimensional non-Cartesian, non–contrast material–enhanced MR angiographic k-space data faster than a central processing unit (CPU)–based compressed sensing (CS) reconstruction pipeline, without significant losses in data fidelity, summed visual score (SVS), or arterial vessel–diameter measurements. Materials and Methods: Raw k-space data of 24 patients (18 men and six women; mean age, 56.8 years 6 11.8 [standard deviation]) suspected of having thoracic aortic disease were used to evaluate the proposed reconstruction pipeline derived from an open-source threedimensional CNN. For training, 4800 zero-filled images and the corresponding CS-reconstructed images from 10 patients were used as input-output pairs. For testing, 6720 zero-filled images from 14 different patients were used as inputs to a trained CNN. Metrics for evaluating the agreement between the CNN and CS images included reconstruction times, structural similarity index (SSIM) and normalized root-mean-square error (NRMSE), SVS (3 = nondiagnostic, 9 = clinically acceptable, 15 = excellent), and vessel diameters. Results: The mean reconstruction time was 65 times and 69 times shorter for the CPU-based and GPU-based CNN pipelines (216.6 seconds 6 40.5 and 204.9 seconds 6 40.5), respectively, than for CS (14 152.3 seconds 6 1708.6) (P, .001). Compared with CS as practical ground truth, CNNs produced high data fidelity (SSIM = 0.94 6 0.02, NRMSE = 2.8% 6 0.4) and not significantly different (P = .25) SVS and aortic diameters, except at one out of seven locations, where the percentage difference was only 3% (ie, clinically irrelevant). Conclusion: The proposed integrated reconstruction pipeline including a CNN architecture is capable of rapidly reconstructing timeresolved volumetric cardiovascular MRI k-space data, without a significant loss in data quality, thereby supporting clinical translation of said non–contrast-enhanced MR angiograms.
UR - http://www.scopus.com/inward/record.url?scp=85090056744&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85090056744&partnerID=8YFLogxK
U2 - 10.1148/ryct.2020190205
DO - 10.1148/ryct.2020190205
M3 - Article
C2 - 32656535
AN - SCOPUS:85090056744
SN - 2638-6135
VL - 2
JO - Radiology: Cardiothoracic Imaging
JF - Radiology: Cardiothoracic Imaging
IS - 3
M1 - e190205
ER -