Screening for genes essential for mouse embryonic stem cell self-renewal using a subtractive RNA interference library

Jun Zheng Zhang, Wei Gao, Hong Bo Yang, Bo Zhang, Zuo Yan Zhu, You Fang Xue*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

41 Scopus citations


The pluripotency of mouse embryonic stem (ES) cells is maintained by self-renewal. To screen for genes essential for this process, we constructed an RNA interference (RNAi) library by inserting subtracted ES cell cDNA fragments into plasmid containing two opposing cytomegalovirus promoters. ES cells were transfected with individual RNAi plasmids and levels of the pluripotency marker Oct-4 were monitored 48 hours later by real time RT-PCR. Of the first 89 RNAi plasmids characterized, 12 downregulated Oct-4 expression to less than 50% of the normal level and 7 of them upregulated Oct-4 expression to more than 150% of the normal level. To investigate their long-term effect on self-renewal, ES cells were transfected by these 19 RNAi plasmids individually and G418-resistant colonies were subjected to alkaline phosphatase (AP) staining after 7 days selection. Except for 4 plasmids that caused cell death, the ratio of AP positive colonies was repressed to less than 60% of the control group by the other 15 plasmids and even below 20% by 10 plasmids. The cDNA fragments in these 10 plasmids correspond to eight genes, including Zfp42/Rex-1, which was chosen for further functional analysis. RNAi knockdown of Zfp42 induced ES cells differentiate to endoderm and mesoderm lineages, and overexpression of Zfp42 also caused ES cells to lose the capacity of self-renewal. Our results indicate that RNAi screen is a feasible and efficient approach to identify genes involved in ES cells self-renewal. Further functional characterization of these genes will promote our understanding of the complex regulatory networks in ES cells.

Original languageEnglish (US)
Pages (from-to)2661-2668
Number of pages8
JournalStem Cells
Issue number12
StatePublished - Dec 2006
Externally publishedYes


  • Mouse embryonic stem cells
  • Oct-4
  • RNA interference library
  • Self-renewal
  • Zfp42/Rex-1

ASJC Scopus subject areas

  • General Medicine


Dive into the research topics of 'Screening for genes essential for mouse embryonic stem cell self-renewal using a subtractive RNA interference library'. Together they form a unique fingerprint.

Cite this