Supporting Data Compression in PnetCDF

Kaiyuan Hou, Qiao Kang, Sunwoo Lee, Ankit Agrawal, Alok Choudhary, Wei Keng Liao

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Recently, the dramatic increase of the data amounts drives up the demand for data compression among HPC applications. Although many file systems and I/O middlewares have incorporated compression features, few high-level parallel I/O libraries support data compression due to the challenges of achieving scalable performance on HPC systems. This paper presents the design and implementation of the variable compression feature in the Parallel NetCDF library. Our design employs the same concept of chunking used by the HDF5 library, but we focus on enabling I/O aggregation across multiple requests to address the challenges on performance and scalability. We evaluate our solution using the I/O kernel of real-world scientific applications and analyze the impacts of data compression on parallel I/O performance. Our result suggests that handling multiple requests at once can significantly improve the parallel I/O performance on chunked and compressed data.

Original languageEnglish (US)
Title of host publicationProceedings - 2021 IEEE International Conference on Big Data, Big Data 2021
EditorsYixin Chen, Heiko Ludwig, Yicheng Tu, Usama Fayyad, Xingquan Zhu, Xiaohua Tony Hu, Suren Byna, Xiong Liu, Jianping Zhang, Shirui Pan, Vagelis Papalexakis, Jianwu Wang, Alfredo Cuzzocrea, Carlos Ordonez
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages86-97
Number of pages12
ISBN (Electronic)9781665439022
DOIs
StatePublished - 2021
Event2021 IEEE International Conference on Big Data, Big Data 2021 - Virtual, Online, United States
Duration: Dec 15 2021Dec 18 2021

Publication series

NameProceedings - 2021 IEEE International Conference on Big Data, Big Data 2021

Conference

Conference2021 IEEE International Conference on Big Data, Big Data 2021
Country/TerritoryUnited States
CityVirtual, Online
Period12/15/2112/18/21

Keywords

  • Chunked Storage Layout
  • Compression
  • I/O Aggregation
  • NetCDF

ASJC Scopus subject areas

  • Information Systems and Management
  • Artificial Intelligence
  • Computer Vision and Pattern Recognition
  • Information Systems

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