@article{f55ab601b33e4f739efc5ac57d5e6de3,
title = "Using machine learning to quantify structural MRI neurodegeneration patterns of Alzheimer's disease into dementia score: Independent validation on 8,834 images from ADNI, AIBL, OASIS, and MIRIAD databases",
abstract = "Biomarkers for dementia of Alzheimer's type (DAT) are sought to facilitate accurate prediction of the disease onset, ideally predating the onset of cognitive deterioration. T1-weighted magnetic resonance imaging (MRI) is a commonly used neuroimaging modality for measuring brain structure in vivo, potentially providing information enabling the design of biomarkers for DAT. We propose a novel biomarker using structural MRI volume-based features to compute a similarity score for the individual's structural patterns relative to those observed in the DAT group. We employed ensemble-learning framework that combines structural features in most discriminative ROIs to create an aggregate measure of neurodegeneration in the brain. This classifier is trained on 423 stable normal control (NC) and 330 DAT subjects, where clinical diagnosis is likely to have the highest certainty. Independent validation on 8,834 unseen images from ADNI, AIBL, OASIS, and MIRIAD Alzheimer's disease (AD) databases showed promising potential to predict the development of DAT depending on the time-to-conversion (TTC). Classification performance on stable versus progressive mild cognitive impairment (MCI) groups achieved an AUC of 0.81 for TTC of 6 months and 0.73 for TTC of up to 7 years, achieving state-of-the-art results. The output score, indicating similarity to patterns seen in DAT, provides an intuitive measure of how closely the individual's brain features resemble the DAT group. This score can be used for assessing the presence of AD structural atrophy patterns in normal aging and MCI stages, as well as monitoring the progression of the individual's brain along with the disease course.",
keywords = "Alzheimer's disease, cross-database independent validation, dementia of Alzheimer's type, dementia score, disease progression, ensemble learning, longitudinal diagnostic stratification, magnetic resonance imaging, probabilistic classifier, prognosis prediction",
author = "Karteek Popuri and Da Ma and Lei Wang and Beg, {Mirza Faisal}",
note = "Funding Information: Wellcome Trust, Grant/Award Number: 091593/Z/10/Z; National Institute for Health Research (NIHR); EPSRC, Grant/Award Number: EP/H046410/1; Medical Research Council, Grant/Award Number: MR/J014257/1; UK Alzheimer's Society; GlaxoSmithKline; Foundation for the National Institutes of Health; Canadian Institutes of Health Research; Transition Therapeutics; Takeda Pharmaceutical Company; Servier; Piramal Imaging; Pfizer Inc.; Novartis Pharmaceuticals Corporation; Neurotrack Technologies; NeuroRx Research; Meso Scale Diagnostics, LLC; Merck & Co., Inc.; Lundbeck; Lumosity; Johnson & Johnson Pharmaceutical Research & Development LLC; Janssen Alzheimer Immunotherapy Research & Development, LLC; IXICO Ltd.; GE Healthcare; Fujirebio US; Genentech, Inc.; F. HoffmannLa Roche Ltd; EuroImmun; Eli Lilly and Company; Elan Pharmaceuticals, Inc.; Eisai Inc.; Cogstate; CereSpir, Inc.; Bristol–Myers Squibb Company; Biogen; BioClinica, Inc.; Araclon Biotech; Alzheimer's Drug Discovery Foundation; Alzheimer's Association; AbbVie; National Institute of Biomedical Imaging and Bioengineering, Grant/Award Number: R01 AG055121‐01A1; Department of Defense, Grant/Award Number: W81XWH‐12‐2‐0012; National Institutes of Health, Grant/Award Number: U01 AG024904; Alzheimer's Disease Neuroimaging Initiative (ADNI); National Institute on Aging; Michael Smith Foundation for Health Research (MSFHR); Pacific Alzheimer's Research Foundation; Foundation Brain Canada; Canadian Institutes of Health Research (CIHR); National Science Engineering Research Council (NSERC); Alzheimer Society Research Program, Grant/Award Number: ASRP 19‐09 Funding information Funding Information: The data that support the findings of this study are derived from the following resources available in the public domain: ADNI and AIBL ( adni.loni.usc.edu ), OASIS‐1 and OASIS2 ( oasis-brains.org ), and MIRIAD ( miriad.drc.ion.ucl.ac.uk ). We have made the methods in this article available for all researchers to use and validate via our website: https://ceramicca.ensc.sfu.ca which is an online portal that connects the method with data and computes from an online form submission. We are providing access to this service to anyone at any time. Data used in preparation of this article were partly obtained from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database ( http://adni.loni.usc.edu ). As such, the investigators within the ADNI contributed to the design and implementation of ADNI and/or provided data but did not participate in analysis or writing of this report. A complete listing of ADNI investigators can be found at http://adni.loni.usc.edu/wp‐content/uploads/how_to_apply/ADNI_Acknowledgement_List.pdf . Data used in the preparation of this article were partly obtained from the Australian Imaging Biomarkers and Lifestyle flagship study of aging (AIBL) funded by the Commonwealth Scientific and Industrial Research Organization (CSIRO) which was made available at the ADNI database ( www.loni.usc.edu/ADNI ). The AIBL researchers contributed data but did not participate in analysis or writing of this report. AIBL researchers are listed at https://aibl.csiro.au/ . 1 Funding Information: Funding for this research is gratefully acknowledged from Alzheimer Society Research Program (ASRP 19-09), National Science Engineering Research Council (NSERC), Canadian Institutes of Health Research (CIHR), Foundation Brain Canada, Pacific Alzheimer's Research Foundation, the Michael Smith Foundation for Health Research (MSFHR), and the National Institute on Aging (R01 AG055121-01A1). We thank Compute Canada for the computational infrastructure provided for the data processing in this study. Data collection and sharing for this project was funded by the Alzheimer's Disease Neuroimaging Initiative (ADNI) (National Institutes of Health Grant U01 AG024904) and DOD ADNI (Department of Defense award number W81XWH-12-2-0012). ADNI is funded by the National Institute on Aging, the National Institute of Biomedical Imaging and Bioengineering, and through generous contributions from the following: AbbVie, Alzheimer's Association; Alzheimer's Drug Discovery Foundation; Araclon Biotech; BioClinica, Inc.; Biogen; Bristol?Myers Squibb Company; CereSpir, Inc.; Cogstate; Eisai Inc.; Elan Pharmaceuticals, Inc.; Eli Lilly and Company; EuroImmun; F. HoffmannLa Roche Ltd and its affiliated company Genentech, Inc.; Fujirebio; GE Healthcare; IXICO Ltd.; Janssen Alzheimer Immunotherapy Research & Development, LLC; Johnson & Johnson Pharmaceutical Research & Development LLC; Lumosity; Lundbeck; Merck & Co., Inc.; Meso Scale Diagnostics, LLC; NeuroRx Research; Neurotrack Technologies; Novartis Pharmaceuticals Corporation; Pfizer Inc.; Piramal Imaging; Servier; Takeda Pharmaceutical Company; and Transition Therapeutics. The Canadian Institutes of Health Research is providing funds to support ADNI clinical sites in Canada. Private sector contributions are facilitated by the Foundation for the National Institutes of Health (www.fnih.org). The grantee organization is the Northern California Institute for Research and Education, and the study is coordinated by the Alzheimer's Therapeutic Research Institute at the University of Southern California. Publisher Copyright: {\textcopyright} 2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.",
year = "2020",
month = oct,
day = "1",
doi = "10.1002/hbm.25115",
language = "English (US)",
volume = "41",
pages = "4127--4147",
journal = "Human Brain Mapping",
issn = "1065-9471",
publisher = "Wiley-Liss Inc.",
number = "14",
}