ZPEG: A hybrid DPCM-DCT based approach for compression of Z-stack images

Sourabh Khire*, Lee Alex Donald Cooper, Yuna Park, Alexis Carter, Nikil Jayant, Joel Saltz

*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Abstract

Modern imaging technology permits obtaining images at varying depths along the thickness, or the Z-axis of the sample being imaged. A stack of multiple such images is called a Z-stack image. The focus capability offered by Z-stack images is critical for many digital pathology applications. A single Z-stack image may result in several hundred gigabytes of data, and needs to be compressed for archival and distribution purposes. Currently, the existing methods for compression of Z-stack images such as JPEG and JPEG 2000 compress each focal plane independently, and do not take advantage of the Z-signal redundancy. It is possible to achieve additional compression efficiency over the existing methods, by exploiting the high Z-signal correlation during image compression. In this paper, we propose a novel algorithm for compression of Z-stack images, which we term as ZPEG. ZPEG extends the popular discrete-cosine transform (DCT) based image encoder to compress Z-stack images. This is achieved by decorrelating the neighboring layers of the Z-stack image using differential pulse-code modulation (DPCM). PSNR measurements, as well as subjective evaluations by experts indicate that ZPEG can encode Z-stack images at a higher quality as compared to JPEG, JPEG 2000 and JP3D at compression ratios below 501.

Original languageEnglish (US)
Title of host publication2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012
Pages5424-5427
Number of pages4
DOIs
StatePublished - 2012
Event34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2012 - San Diego, CA, United States
Duration: Aug 28 2012Sep 1 2012

Publication series

NameProceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS
ISSN (Print)1557-170X

Other

Other34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS 2012
CountryUnited States
CitySan Diego, CA
Period8/28/129/1/12

ASJC Scopus subject areas

  • Signal Processing
  • Biomedical Engineering
  • Computer Vision and Pattern Recognition
  • Health Informatics

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